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There is nothing wrong with what you want to do. I have done
the same thing my self. The size of the partitions is purely personal. The advantage of this is should windows become corrupted. You can reinstall the operating system and not lose any of your valuable data.
As a side note should you install Windows 2000 or Windows XP using the NTFS table. Later on should you try to format C: with a DOS boot disk you will format your D: drive instead.
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