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There are workaround for changing the driveletter of the systemdrive, I remember reading about this at the ms knowledgebase. I also remember they don't recommend to do it as they can't guarantee that everything will work. Considering there allready are errors in the registry immediately after a fresh install I believe them.
I tried this once but have to admit I didn't manage to get the system alltogether stable. It's easier to reinstall.
As you can boot and use the system now it's a good opportunity to make it all right. Check the driveletters/partitions now, change them into the order you want them to. Copy the i386 dir to another drive than the one you want to have as C: and then run winnt32.exe from within WinXP. Chooose the advanced option where you can tell the setup you want to decide where the system shall live. Then you will get the option to choose this during the setup later.
10 cents from
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unicorn
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